OBO Foundry dashboard analysis¶

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/tmp/ipykernel_5076/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle                   30
RDF/XML Syntax           30
unknown                   1
OWL/XML Syntax            1
OWL Functional Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 61 5508.174603 19590.798035 0.0 196.5 1234.0 2379.0 124680.0
Declaration 61 1149.174603 3159.995741 0.0 102.0 413.0 889.0 22818.0
SubClassOf 59 1371.285714 4260.468358 0.0 26.0 288.0 919.5 24611.0
ObjectPropertyRange 54 42.777778 70.269629 0.0 12.0 28.0 53.5 520.0
ObjectPropertyDomain 53 40.920635 70.337963 0.0 8.0 22.0 57.0 517.0
DataPropertyRange 48 13.380952 26.630948 0.0 1.0 5.0 11.0 170.0
SubObjectPropertyOf 47 56.603175 102.978316 0.0 0.5 26.0 63.5 709.0
InverseObjectProperties 45 13.777778 24.287555 0.0 0.0 3.0 17.0 128.0
ClassAssertion 44 174.126984 525.996795 0.0 0.0 2.0 23.5 3053.0
DataPropertyDomain 44 13.396825 36.801797 0.0 0.0 2.0 7.0 235.0
DisjointClasses 43 214.444444 1545.206509 0.0 0.0 4.0 20.0 12277.0
EquivalentClasses 39 146.777778 774.167033 0.0 0.0 7.0 67.5 6154.0
SubDataPropertyOf 33 9.126984 31.605681 0.0 0.0 1.0 7.0 242.0
TransitiveObjectProperty 32 4.380952 7.625146 0.0 0.0 1.0 5.5 38.0
SubAnnotationPropertyOf 31 12.301587 32.269348 0.0 0.0 0.0 12.0 228.0
FunctionalObjectProperty 30 2.888889 4.501294 0.0 0.0 0.0 4.0 18.0
FunctionalDataProperty 26 2.063492 4.911714 0.0 0.0 0.0 2.0 26.0
InverseFunctionalObjectProperty 23 1.523810 2.734824 0.0 0.0 0.0 1.0 12.0
AnnotationPropertyRangeOf 23 5.730159 17.927458 0.0 0.0 0.0 2.0 134.0
SymmetricObjectProperty 22 3.380952 6.961712 0.0 0.0 0.0 4.5 35.0
IrrefexiveObjectProperty 20 3.238095 6.697892 0.0 0.0 0.0 1.0 24.0
ObjectPropertyAssertion 19 364.047619 1645.765391 0.0 0.0 0.0 3.0 10226.0
AsymmetricObjectProperty 18 2.793651 5.828624 0.0 0.0 0.0 1.0 20.0
DisjointUnion 15 8.031746 20.819476 0.0 0.0 0.0 0.0 116.0
DataPropertyAssertion 15 123.698413 515.688379 0.0 0.0 0.0 0.0 3617.0
SubPropertyChainOf 13 4.126984 17.113937 0.0 0.0 0.0 0.0 120.0
ReflexiveObjectProperty 9 0.190476 0.534522 0.0 0.0 0.0 0.0 3.0
EquivalentObjectProperties 9 1.238095 4.855042 0.0 0.0 0.0 0.0 36.0
AnnotationPropertyDomain 8 0.222222 0.831719 0.0 0.0 0.0 0.0 6.0
DifferentIndividuals 7 0.730159 3.365893 0.0 0.0 0.0 0.0 25.0
DisjointObjectProperties 6 0.333333 1.448024 0.0 0.0 0.0 0.0 10.0
Rule 5 0.666667 3.364904 0.0 0.0 0.0 0.0 25.0
SameIndividual 4 2.365079 15.004625 0.0 0.0 0.0 0.0 118.0
NegativeObjectPropertyAssertion 2 0.031746 0.176731 0.0 0.0 0.0 0.0 1.0
EquivalentDataProperties 2 0.238095 1.399473 0.0 0.0 0.0 0.0 10.0
DatatypeDefinition 2 0.317460 2.395058 0.0 0.0 0.0 0.0 19.0
DisjointDataProperties 1 0.031746 0.251976 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 62 4827.761905 13598.023835 0.0 219.0 1142.0 3463.5 78659.0
ObjectUnionOf 43 15.714286 22.956079 0.0 0.0 6.0 14.0 88.0
ObjectAllValuesFrom 38 27.841270 58.321193 0.0 0.0 5.0 40.5 400.0
ObjectSomeValuesFrom 37 385.333333 2098.220913 0.0 0.0 7.0 112.0 16630.0
ObjectIntersectionOf 33 130.841270 784.468306 0.0 0.0 1.0 18.0 6224.0
ObjectExactCardinality 30 6.523810 17.739929 0.0 0.0 0.0 5.0 115.0
DataExactCardinality 25 2.571429 4.309458 0.0 0.0 0.0 3.0 18.0
DataHasValue 20 31.158730 76.279877 0.0 0.0 0.0 6.0 494.0
DataAllValuesFrom 20 1.000000 1.849150 0.0 0.0 0.0 2.0 9.0
ObjectComplementOf 19 5.301587 23.026377 0.0 0.0 0.0 3.5 179.0
DataSomeValuesFrom 19 2.000000 5.108500 0.0 0.0 0.0 2.5 33.0
ObjectHasValue 17 11.888889 40.442756 0.0 0.0 0.0 1.0 211.0
ObjectMinCardinality 16 1.619048 4.577041 0.0 0.0 0.0 0.5 28.0
ObjectMaxCardinality 13 15.031746 112.596048 0.0 0.0 0.0 0.0 894.0
ObjectOneOf 11 11.952381 52.340827 0.0 0.0 0.0 0.0 275.0
DataMaxCardinality 6 1.634921 8.211521 0.0 0.0 0.0 0.0 62.0
DataMinCardinality 5 0.285714 1.772811 0.0 0.0 0.0 0.0 14.0
ObjectHasSelf 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
36 PATO 0.342 0.556 0.127
38 PROVO 0.340 0.504 0.175
17 FOAF 0.333 0.333 0.333
31 OBO 0.333 0.571 0.095
19 IAO 0.300 0.600 0.000
50 enanomapper 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
32 OEO 0.285 0.571 0.000
27 MaterialsMine 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
37 PMDCO 0.275 0.549 0.000
39 QUDT 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
42 SEMMD 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
10 EMMO_BattINFO 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
51 m4i 0.241 0.482 0.000
41 SAREF 0.241 0.482 0.000
44 SO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
28 NPO 0.234 0.467 0.000
45 SP 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
47 UO 0.234 0.467 0.000
33 OM 0.234 0.467 0.000
55 mvc 0.222 0.444 0.000
5 CIF-core 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
52 mat 0.222 0.444 0.000
29 NanoMine 0.222 0.444 0.000
26 MatOnto 0.222 0.444 0.000
25 MSEO 0.222 0.444 0.000
57 nfdicore 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
30 OA 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
24 MOL_TENSILE 0.208 0.416 0.000
60 periodictable 0.200 0.400 0.000
59 opmw 0.200 0.400 0.000
35 P-Plan 0.200 0.400 0.000
48 WILD 0.200 0.400 0.000
43 SKOS_MDO 0.200 0.400 0.000
46 SSN 0.189 0.378 0.000
56 mwo 0.189 0.378 0.000
34 OSMO 0.189 0.378 0.000
49 bmo 0.189 0.378 0.000
23 MOL_BRINELL 0.189 0.378 0.000
53 matinfo 0.167 0.333 0.000
40 QUDV 0.167 0.333 0.000
61 ssos 0.155 0.311 0.000
58 ontorule 0.155 0.311 0.000
62 vimmp 0.000 0.000 0.000
54 metal-alloy 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 63.0 0.230825 0.059601 0.0 0.204 0.234 0.264 0.342
score_dash 63.0 0.449841 0.108518 0.0 0.400 0.467 0.504 0.600
score_impact 63.0 0.011587 0.050515 0.0 0.000 0.000 0.000 0.333

OBO dependency graph